Hi, Xingyu.
Thank you for taking time to respond! I'm already using parallel processing, which is (in some ways) equivalent to the functionality offered by OpenMPI. As a matter of fact, I'm taking this one step further - instead of creating one-off HHEd processes, my goal is to create a number of reusable HHEd processes which run as servers and respond to incoming messages. This is done to avoid the penalty of re-initialization from the same set of input parameters over and over again. Surely, it should be possible to achieve, no?
Regards,
Dmitry.
From: Xingyu Na <nxy-yzqs@xxxxxxx>
To: hts-users@xxxxxxxxxxxxxxx
Sent: Friday, October 31, 2014 2:16 AM
Subject: [hts-users:04159] Re: HHEd to process multiple workloads
Hi Dmitry,
Are you trying to parallel the clustering process?
In such case, I recommend using openmpi. It allows you to create
multiple processes(not threads) of HHEd to cluster different streams. I
did this before, not the code is with business license. Hope this would
help you.
--
Xingyu
On 10/31/2014 12:53 PM, Dmitry Bakuntsev wrote:
> Hi,
>
>
>
> Summary:
> I'm trying to modify HHEd to process multiple workloads, while initializing only once. Error "ERROR [+9999] AssignStructure: incompatible tree" occurs.
>
>
>
>
> Details:
>
> The full original command line looks like the following:
>
> HHEd -A -B -C trn.cnf -D -T 1 -p -i -H cmp.re_clustered.mmf -w cmp.re_clustered_all.mmf.1mix mku.cmp.hed full.list
>
> ... where"-w cmp.re_clustered_all.mmf.1mix" and "mku.cmp.hed" are the parameters that define "a workload". The goal is to initialize an instance of HHEd once using the rest of the command line parameters, and then process sequentially multiple sets of the "workloads". Examples of trn.cnf and mku.cmd.hed files are attached.
>
>
> A simplified version of the source code is attached in HHEdPP.cpp file. HHEd_Init() is called once, and then HHEd_DoWork() is called repeatedly with different parameters. On the second HHEd_DoWork() call, the error "ERROR [+9999] AssignStructure: incompatible tree" is generated. Apparently, some clean-up must be done after each HHEd_DoWork() call, but I am unable to figure out how to do that correctly.
>
> Any insight into how hset->swidth is initialized and how to clean it up properly for reuse is greatly appreciated!
>
>
>
> Regards,
> Dmitry.【来自网易邮箱的超大附件】
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>
> HHEdPP.cpp
> 下载: http://u.163.com/t/bK3nRPwKx
>
> 预览: http://u.163.com/t/PaxpmkUrN
>
>
> trn.cnf
> 下载: http://u.163.com/t/vWvvFn
>
>
> mku.cmp.hed
> 下载: http://u.163.com/t/qE5BqX2YKX
>
>
>